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TENT2 terminal nucleotidyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100512336, updated on 17-Aug-2024

Summary

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Official Symbol
TENT2provided by VGNC
Official Full Name
terminal nucleotidyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:96768
See related
Ensembl:ENSSSCG00000014114
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PAPD4
Expression
Ubiquitous expression in spleen (RPKM 14.0), lung (RPKM 7.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TENT2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (88328250..88388242)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (90128225..90182371)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene homer scaffold protein 1 Neighboring gene uncharacterized LOC102158947 Neighboring gene cardiomyopathy associated 5 Neighboring gene uncharacterized LOC106509485

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A) RNA polymerase GLD2
Names
poly(A) RNA polymerase D4, non-canonical

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    88328250..88388242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123752.6 → XP_003123800.1  poly(A) RNA polymerase GLD2 isoform X1

    UniProtKB/TrEMBL
    A0A286ZXL0, A0A4X1T558, A0A8D0ZVN4, A0A8D1CF28
    Related
    ENSSSCP00000036197.1, ENSSSCT00000057835.2
    Conserved Domains (1) summary
    cl27230
    Location:154 → 436
    PAP_assoc; Cid1 family poly A polymerase

  2. XM_005661515.3 → XP_005661572.1  poly(A) RNA polymerase GLD2 isoform X2

    UniProtKB/TrEMBL
    A0A480I3I8, A0A4X1T558
    Conserved Domains (1) summary
    cl27230
    Location:154 → 432
    PAP_assoc; Cid1 family poly A polymerase

  3. XM_021084489.1 → XP_020940148.1  poly(A) RNA polymerase GLD2 isoform X4

    Conserved Domains (1) summary
    cl27230
    Location:47 → 222
    PAP_assoc; Cid1 family poly A polymerase

  4. XM_021084486.1 → XP_020940145.1  poly(A) RNA polymerase GLD2 isoform X1

    UniProtKB/TrEMBL
    A0A286ZXL0, A0A4X1T558, A0A8D0ZVN4, A0A8D1CF28
    Conserved Domains (1) summary
    cl27230
    Location:154 → 436
    PAP_assoc; Cid1 family poly A polymerase

  5. XM_021084487.1 → XP_020940146.1  poly(A) RNA polymerase GLD2 isoform X2

    UniProtKB/TrEMBL
    A0A480I3I8, A0A4X1T558
    Conserved Domains (1) summary
    cl27230
    Location:154 → 432
    PAP_assoc; Cid1 family poly A polymerase

  6. XM_021084488.1 → XP_020940147.1  poly(A) RNA polymerase GLD2 isoform X3

    UniProtKB/TrEMBL
    A0A287B4J1, A0A4X1T3R6, A0A8D0PS93
    Related
    ENSSSCP00000051000.2, ENSSSCT00000064644.2
    Conserved Domains (2) summary
    cd05402
    Location:176 → 298
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    pfam03828
    Location:343 → 397
    PAP_assoc; Cid1 family poly A polymerase

RNA

  1. XR_002341779.1 RNA Sequence

  2. XR_002341763.1 RNA Sequence

  3. XR_002341781.1 RNA Sequence

  4. XR_002341762.1 RNA Sequence

  5. XR_002341770.1 RNA Sequence

  6. XR_002341766.1 RNA Sequence

  7. XR_002341765.1 RNA Sequence

  8. XR_002341773.1 RNA Sequence

  9. XR_002341776.1 RNA Sequence

  10. XR_002341780.1 RNA Sequence

  11. XR_002341761.1 RNA Sequence

  12. XR_002341764.1 RNA Sequence

  13. XR_002341777.1 RNA Sequence

  14. XR_002341767.1 RNA Sequence

  15. XR_002341771.1 RNA Sequence

  16. XR_002341772.1 RNA Sequence

  17. XR_002341768.1 RNA Sequence

  18. XR_002341782.1 RNA Sequence

  19. XR_002341778.1 RNA Sequence

  20. XR_002341758.1 RNA Sequence

  21. XR_002341775.1 RNA Sequence

  22. XR_002341774.1 RNA Sequence

  23. XR_002341757.1 RNA Sequence

  24. XR_002341759.1 RNA Sequence

  25. XR_002341769.1 RNA Sequence

  26. XR_002341756.1 RNA Sequence

  27. XR_002341760.1 RNA Sequence

Nucleotide Protein
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