U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ACSM3 acyl-CoA synthetase medium chain family member 3 [ Sus scrofa (pig) ]

Gene ID: 100512220, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ACSM3provided by VGNC
Official Full Name
acyl-CoA synthetase medium chain family member 3provided by VGNC
Primary source
VGNC:VGNC:85035
See related
Ensembl:ENSSSCG00000007857
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 17.3), liver (RPKM 10.0) and 2 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ACSM3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (25247723..25284063, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (26031989..26068440, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene LYR motif containing 1 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene RNA exonuclease 5 Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene THUMP domain containing 1 Neighboring gene acyl-CoA synthetase medium-chain family member 4 Neighboring gene acyl-CoA synthetase medium chain family member 2B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
acyl-coenzyme A synthetase ACSM3, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    25247723..25284063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021086514.1 → XP_020942173.1  acyl-coenzyme A synthetase ACSM3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8D0TEX3, A0A8D0Z227, A0A8D1E0Y9, F1RPB1
    Conserved Domains (1) summary
    cd05928
    Location:48 → 578
    MACS_euk; Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

  2. XM_013995610.2 → XP_013851064.1  acyl-coenzyme A synthetase ACSM3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8D0TEX3, A0A8D0Z227, A0A8D1E0Y9, F1RPB1
    Conserved Domains (1) summary
    cd05928
    Location:48 → 578
    MACS_euk; Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

  3. XM_003124568.5 → XP_003124616.2  acyl-coenzyme A synthetase ACSM3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8D0TEX3, A0A8D0Z227, A0A8D1E0Y9, F1RPB1
    Related
    ENSSSCP00000008387.3, ENSSSCT00000008608.5
    Conserved Domains (1) summary
    cd05928
    Location:48 → 578
    MACS_euk; Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

  4. XM_005662098.3 → XP_005662155.1  acyl-coenzyme A synthetase ACSM3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8D0M8X9, A0A8D1M2T8
    Conserved Domains (2) summary
    COG0365
    Location:45 → 535
    Acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [Lipid transport and metabolism]
    cl17068
    Location:48 → 538
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials