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ACSS3 acyl-CoA synthetase short chain family member 3 [ Sus scrofa (pig) ]

Gene ID: 100512104, updated on 17-Aug-2024

Summary

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Official Symbol
ACSS3provided by VGNC
Official Full Name
acyl-CoA synthetase short chain family member 3provided by VGNC
Primary source
VGNC:VGNC:85037
See related
Ensembl:ENSSSCG00000000939
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 37.8), liver (RPKM 17.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (100272255..100429229, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (105195329..105368501, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene myosin light chain 6B pseudogene Neighboring gene coiled-coil domain containing 59 Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene uncharacterized LOC102165555 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
acyl-CoA synthetase short-chain family member 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    100272255..100429229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003481763.4 → XP_003481811.2  acyl-CoA synthetase short-chain family member 3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A480TKZ3, A0A4X1UVP3, A0A8D0XMN7, A0A8D1NGC7, A0A8D1XJT9
    Related
    ENSSSCP00000031574.2, ENSSSCT00000053340.3
    Conserved Domains (1) summary
    cd05967
    Location:71 → 678
    PrpE; Propionyl-CoA synthetase (PrpE)

  2. XM_021093056.1 → XP_020948715.1  acyl-CoA synthetase short-chain family member 3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A480ZU66, A0A8D1EA18
    Related
    ENSSSCP00000051086.1, ENSSSCT00000059893.3
    Conserved Domains (1) summary
    cd05967
    Location:1 → 571
    PrpE; Propionyl-CoA synthetase (PrpE)

  3. XM_021093057.1 → XP_020948716.1  acyl-CoA synthetase short-chain family member 3, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A4X1URZ5, A0A8D0XVA9, A0A8D1NNB2
    Conserved Domains (1) summary
    cl17068
    Location:71 → 572
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
Heading Accession and Version

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