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SYP synaptophysin [ Sus scrofa (pig) ]

Gene ID: 100512029, updated on 17-Aug-2024

Summary

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Official Symbol
SYPprovided by VGNC
Official Full Name
synaptophysinprovided by VGNC
Primary source
VGNC:VGNC:93676
See related
Ensembl:ENSSSCG00000012292
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in mixtures (RPKM 15.6), spleen (RPKM 2.2) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SYP in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (43232190..43246764, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (48080132..48094682, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene MAGI family member, X-linked Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2 Neighboring gene calcium voltage-gated channel subunit alpha1 F Neighboring gene coiled-coil domain containing 22 Neighboring gene forkhead box P3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. A comparative immunohistochemical study of pancreatic islets in laboratory animals (rats, dogs, minipigs, nonhuman primates). Wieczorek G, et al. Exp Toxicol Pathol, 1998 Jun. PMID 9681646
  2. Cellular expression and specific intragranular localization of chromogranin A, chromogranin B, and synaptophysin during ontogeny of pancreatic islet cells: an ultrastructural study. Lukinius A, et al. Pancreas, 2003 Jul. PMID 12826904
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptophysin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    43232190..43246764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003135078.5 → XP_003135126.2  synaptophysin

    UniProtKB/TrEMBL
    A0A480MAK8, A0A4X1SYD7, A0A8D1GZ12
    Related
    ENSSSCP00000013081.4, ENSSSCT00000013441.6
    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain
Nucleotide Protein
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