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CORO2A coronin 2A [ Sus scrofa (pig) ]

Gene ID: 100511910, updated on 17-Aug-2024

Summary

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Official Symbol
CORO2Aprovided by VGNC
Official Full Name
coronin 2Aprovided by VGNC
Primary source
VGNC:VGNC:86915
See related
Ensembl:ENSSSCG00000005375
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 1.2), lung (RPKM 0.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CORO2A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (239947299..240000964, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (268117471..268171600, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ferritin light chain-like Neighboring gene N-acetylneuraminate synthase Neighboring gene tripartite motif containing 14 Neighboring gene TBC1 domain family member 2 Neighboring gene uncharacterized LOC106509209 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coronin-2A
Names
coronin, actin binding protein, 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    239947299..240000964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005660267.3 → XP_005660324.1  coronin-2A

    UniProtKB/TrEMBL
    A0A480XGM3, A0A4X1TZM0, A0A8D0TFK5, A0A8D1W194
    Related
    ENSSSCP00000005768.3, ENSSSCT00000005915.4
    Conserved Domains (6) summary
    PTZ00421
    Location:10 → 518
    PTZ00421; coronin; Provisional
    pfam08953
    Location:8 → 65
    DUF1899; Domain of unknown function (DUF1899)
    pfam13863
    Location:478 → 516
    DUF4200; Domain of unknown function (DUF4200)
    pfam16300
    Location:350 → 392
    WD40_4; Type of WD40 repeat
    sd00039
    Location:40 → 80
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:79 → 306
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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