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GPKOW G-patch domain and KOW motifs [ Sus scrofa (pig) ]

Gene ID: 100511851, updated on 17-Aug-2024

Summary

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Official Symbol
GPKOWprovided by VGNC
Official Full Name
G-patch domain and KOW motifsprovided by VGNC
Primary source
VGNC:VGNC:88589
See related
Ensembl:ENSSSCG00000012291
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.5), kidney (RPKM 8.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GPKOW in Genome Data Viewer
Location:
chromosome: X
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (43177264..43192021, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (48025071..48039785, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene PRA1 domain family member 2 Neighboring gene WD repeat domain 45 Neighboring gene MAGI family member, X-linked Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G patch domain and KOW motifs-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    43177264..43192021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021080011.1 → XP_020935670.1  G patch domain and KOW motifs-containing protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain

  2. XM_021080009.1 → XP_020935668.1  G patch domain and KOW motifs-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:302 → 358
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:485 → 535
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:212 → 266
    G-patch_2; G-patch domain

  3. XM_021080008.1 → XP_020935667.1  G patch domain and KOW motifs-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:303 → 359
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:486 → 536
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:213 → 267
    G-patch_2; G-patch domain

  4. XM_021080007.1 → XP_020935666.1  G patch domain and KOW motifs-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:344 → 400
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:527 → 577
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:254 → 308
    G-patch_2; G-patch domain

  5. XM_021080010.1 → XP_020935669.1  G patch domain and KOW motifs-containing protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Related
    ENSSSCP00000029649.2, ENSSSCT00000035742.4
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain

  6. XM_003135077.5 → XP_003135125.2  G patch domain and KOW motifs-containing protein isoform X4

    See identical proteins and their annotated locations for XP_003135125.2

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain

  7. XM_005673606.3 → XP_005673663.1  G patch domain and KOW motifs-containing protein isoform X4

    See identical proteins and their annotated locations for XP_005673663.1

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain

  8. XM_021080012.1 → XP_020935671.1  G patch domain and KOW motifs-containing protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain

  9. XM_021080013.1 → XP_020935672.1  G patch domain and KOW motifs-containing protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1SXY6, A0A8D1PKE0, A0A8D1X8R8, F1RW48
    Conserved Domains (3) summary
    cd13152
    Location:241 → 297
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:424 → 474
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:151 → 205
    G-patch_2; G-patch domain
Nucleotide Protein
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