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CNTN3 contactin 3 [ Sus scrofa (pig) ]

Gene ID: 100511594, updated on 17-Aug-2024

Summary

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Official Symbol
CNTN3provided by VGNC
Official Full Name
contactin 3provided by VGNC
Primary source
VGNC:VGNC:108642
See related
Ensembl:ENSSSCG00000011522
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 2.5), kidney (RPKM 1.5) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CNTN3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (55648491..56018887, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (61559427..61705572, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene PDZ domain containing ring finger 3 Neighboring gene uncharacterized LOC106505322 Neighboring gene uncharacterized LOC106505655 Neighboring gene uncharacterized LOC110256276 Neighboring gene cell adhesion molecule L1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    55648491..56018887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021069229.1 → XP_020924888.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  2. XM_021069233.1 → XP_020924892.1  contactin-3 isoform X4

    UniProtKB/TrEMBL
    A0A4X1V952, A0A8D0MNL7
    Conserved Domains (3) summary
    smart00060
    Location:603 → 664
    FN3; Fibronectin type 3 domain
    cd00063
    Location:760 → 853
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:232 → 320
    Ig; Immunoglobulin domain

  3. XM_021069224.1 → XP_020924883.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:603 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:232 → 320
    Ig; Immunoglobulin domain

  4. XM_021069223.1 → XP_020924882.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:603 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:232 → 320
    Ig; Immunoglobulin domain

  5. XM_021069222.1 → XP_020924881.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:603 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:232 → 320
    Ig; Immunoglobulin domain

  6. XM_021069237.1 → XP_020924896.1  contactin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:181 → 269
    Ig; Immunoglobulin domain

  7. XM_021069234.1 → XP_020924893.1  contactin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:181 → 269
    Ig; Immunoglobulin domain

  8. XM_021069236.1 → XP_020924895.1  contactin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:181 → 269
    Ig; Immunoglobulin domain

  9. XM_021069235.1 → XP_020924894.1  contactin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:181 → 269
    Ig; Immunoglobulin domain

  10. XM_021069225.1 → XP_020924884.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Related
    ENSSSCP00000012281.3, ENSSSCT00000012610.5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  11. XM_021069228.1 → XP_020924887.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  12. XM_021069226.1 → XP_020924885.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  13. XM_021069238.1 → XP_020924897.1  contactin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:181 → 269
    Ig; Immunoglobulin domain

  14. XM_021069230.1 → XP_020924889.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  15. XM_021069227.1 → XP_020924886.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  16. XM_021069232.1 → XP_020924891.1  contactin-3 isoform X3

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:586 → 683
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:215 → 303
    Ig; Immunoglobulin domain

  17. XM_021069231.1 → XP_020924890.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LGI2, F1SFM5
    Conserved Domains (2) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  18. XM_021069239.1 → XP_020924898.1  contactin-3 isoform X6

    UniProtKB/TrEMBL
    A0A4X1V921, A0A8D0MN53
    Conserved Domains (2) summary
    cd00063
    Location:603 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:232 → 320
    Ig; Immunoglobulin domain
Nucleotide Protein
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