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CDR2L cerebellar degeneration related protein 2 like [ Sus scrofa (pig) ]

Gene ID: 100511219, updated on 17-Aug-2024

Summary

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Official Symbol
CDR2Lprovided by VGNC
Official Full Name
cerebellar degeneration related protein 2 likeprovided by VGNC
Primary source
VGNC:VGNC:86522
See related
Ensembl:ENSSSCG00000017218
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 22.9), kidney (RPKM 22.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CDR2L in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6270566..6282471, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (6255244..6267134, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255971 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene mitochondrial ribosomal protein L58 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene HID1 domain containing Neighboring gene otopetrin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cerebellar degeneration-related protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6270566..6282471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003482949.4 → XP_003482997.1  cerebellar degeneration-related protein 2-like

    UniProtKB/TrEMBL
    A0A4X1V3T1, A0A8D1JKB4, F1RVV7
    Related
    ENSSSCP00000018241.2, ENSSSCT00000018743.4
    Conserved Domains (1) summary
    TIGR02168
    Location:12 → 275
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version

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