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MRPL20 mitochondrial ribosomal protein L20 [ Sus scrofa (pig) ]

Gene ID: 100511022, updated on 17-Aug-2024

Summary

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Official Symbol
MRPL20provided by VGNC
Official Full Name
mitochondrial ribosomal protein L20provided by VGNC
Primary source
VGNC:VGNC:90356
See related
Ensembl:ENSSSCG00000033374
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 62.4), heart (RPKM 39.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MRPL20 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (63670750..63675834, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (58274566..58279667, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261342 Neighboring gene aurora kinase A interacting protein 1 Neighboring gene cyclin L2 Neighboring gene ankyrin repeat domain 65 Neighboring gene transmembrane protein 88B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
39S ribosomal protein L20, mitochondrial; mitochondrial ribosomal protein L20
Names
39S ribosomal protein L20, mitochondrial-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    63670750..63675834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003127507.6 → XP_003127555.3  39S ribosomal protein L20, mitochondrial

    See identical proteins and their annotated locations for XP_003127555.3

    UniProtKB/TrEMBL
    A0A286ZU56, A0A4X1W3A3, A0A8D0Q0S5
    Related
    ENSSSCP00000035117.1, ENSSSCT00000038578.3
    Conserved Domains (1) summary
    pfam00453
    Location:13 → 113
    Ribosomal_L20; Ribosomal protein L20
Nucleotide Protein
Heading Accession and Version

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