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LINC03014 long intergenic non-protein coding RNA 3014 [ Homo sapiens (human) ]

Gene ID: 100507642, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03014provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3014provided by HGNC
Primary source
HGNC:HGNC:56142
See related
Ensembl:ENSG00000240859 AllianceGenome:HGNC:56142
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 1.5), gall bladder (RPKM 1.3) and 24 other tissues See more
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Genomic context

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See LINC03014 in Genome Data Viewer
Location:
7p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (149718..155465)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (250381..256128)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (149718..155465)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375114 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:119835-120053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:133814-134316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:134317-134819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:139089-139857 Neighboring gene long intergenic non-protein coding RNA 3015 Neighboring gene Sharpr-MPRA regulatory region 13780 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:159391-160174 Neighboring gene TRIO and F-actin-binding protein-like Neighboring gene uncharacterized LOC105375115 Neighboring gene uncharacterized LOC124901806

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC093627.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108064.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC093627, BF512217, DB179823

  2. NR_108065.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and is shorter compared to variant 1.
    Source sequence(s)
    AC093627, BF512217, DA923216
    Related
    ENST00000664368.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    149718..155465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159998.1 Reference GRCh38.p14 PATCHES

    Range
    125406..131153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187558.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    105523..111270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187653.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    142039..147786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    250381..256128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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