U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100507548 uncharacterized LOC100507548 [ Homo sapiens (human) ]

Gene ID: 100507548, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100507548
Gene description
uncharacterized LOC100507548
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100507548 in Genome Data Viewer
Location:
11q25
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134985352..134986799)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (135033271..135034718)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (134855246..134856693)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2456 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134617746-134618945 Neighboring gene NANOG hESC enhancer GRCh37_chr11:134618982-134619663 Neighboring gene long intergenic non-protein coding RNA 2714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134671658-134672158 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:134721213-134722412 Neighboring gene Sharpr-MPRA regulatory region 927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134775628-134776555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134811107-134811935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817200-134817700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817701-134818201 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134818754-134819953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134831501-134832001 Neighboring gene long intergenic non-protein coding RNA 2697 Neighboring gene uncharacterized LOC105369587 Neighboring gene long intergenic non-protein coding RNA 2717 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134906565-134907193 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:134908884-134909384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134938655-134939156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5776 Neighboring gene long intergenic non-protein coding RNA 2684

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135050.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK130852

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    134985352..134986799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    135033271..135034718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials