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LINC01504 long intergenic non-protein coding RNA 1504 [ Homo sapiens (human) ]

Gene ID: 100507540, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01504provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1504provided by HGNC
Primary source
HGNC:HGNC:51185
See related
Ensembl:ENSG00000225434 AllianceGenome:HGNC:51185
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9q21.13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (72305436..72343210)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (84456269..84494057)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (74920352..74958126)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NME/NM23 nucleoside diphosphate kinase 2 pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 285 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:74930554-74931102 Neighboring gene hESC enhancers GRCh37_chr9:74979127-74979830 and GRCh37_chr9:74979831-74980535 Neighboring gene zinc finger AN1-type containing 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28458 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:75069728-75070499 Neighboring gene ribosomal protein S12 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110952.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This transcript (1) represents the longer transcript.
    Source sequence(s)
    AK095210, AL135924
    Related
    ENST00000436054.1

  2. NR_110953.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' structure and is shorter compared to variant 1.
    Source sequence(s)
    AA436218, AL135924, N93488
    Related
    ENST00000451152.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    72305436..72343210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    84456269..84494057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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