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LINC00613 long intergenic non-protein coding RNA 613 [ Homo sapiens (human) ]

Gene ID: 100507528, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00613provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 613provided by HGNC
Primary source
HGNC:HGNC:44060
See related
Ensembl:ENSG00000248330 AllianceGenome:HGNC:44060
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC00613 in Genome Data Viewer
Location:
4q28.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (135866983..135913680, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (139189620..139236335, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (136788138..136834835, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene keratin 18 pseudogene 54 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:136526180-136526725 Neighboring gene TARS2 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:136746018-136746209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:136946568-136947137 Neighboring gene RNA, U1 small nuclear 89, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:137027831-137028405 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:137124169-137124836 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:137202470-137203154 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:137220416-137221015 Neighboring gene TERF1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103762.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC104136, AW237894, BG204498
    Related
    ENST00000504365.1

  2. NR_103763.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate upstream exon in place of the first two exons compared to variant 1.
    Source sequence(s)
    AC104136, BG204498, BG220241
    Related
    ENST00000508714.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    135866983..135913680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    139189620..139236335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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