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CT66 cancer/testis associated transcript 66 [ Homo sapiens (human) ]

Gene ID: 100507468, updated on 10-Oct-2023

Summary

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Official Symbol
CT66provided by HGNC
Official Full Name
cancer/testis associated transcript 66provided by HGNC
Primary source
HGNC:HGNC:54198
See related
Ensembl:ENSG00000234215 AllianceGenome:HGNC:54198
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 20.6) See more
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Genomic context

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Location:
7q11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (69594804..69597624, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (70817587..70820407, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (69059790..69062610, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:68915277-68916058 Neighboring gene RNA, U6 small nuclear 229, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:68922873-68923388 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:68983024-68983643 Neighboring gene uncharacterized LOC105375346 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18223 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18224 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:69073614-69074587 Neighboring gene NANOG hESC enhancer GRCh37_chr7:69075092-69075654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26096 Neighboring gene Sharpr-MPRA regulatory region 1350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26100 Neighboring gene Sharpr-MPRA regulatory region 8911 Neighboring gene activator of transcription and developmental regulator AUTS2 Neighboring gene NANOG hESC enhancer GRCh37_chr7:69209815-69210316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26103 Neighboring gene VISTA enhancer hs2315 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26104 Neighboring gene VISTA enhancer hs1660 Neighboring gene NANOG hESC enhancer GRCh37_chr7:69537097-69537598 Neighboring gene VISTA enhancer hs1425 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:69604114-69604315 Neighboring gene NANOG hESC enhancer GRCh37_chr7:69615911-69616412 Neighboring gene VISTA enhancer hs2316 Neighboring gene heart enhancer 21 Neighboring gene VISTA enhancer hs658 Neighboring gene VISTA enhancer hs2317 Neighboring gene VISTA enhancer hs2318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:69813727-69814226 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:69857943-69858138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26109 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:69881219-69881824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:69881825-69882428 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:69917332-69917455 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:69961601-69962108 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:69969942-69971141 Neighboring gene uncharacterized LOC124901669 Neighboring gene uncharacterized LOC124901668

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The novelty of human cancer/testis antigen encoding genes in evolution. Dobrynin P, et al. Int J Genomics, 2013. PMID 23691492, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • cancer/testis antigen 66

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108105.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006012
    Related
    ENST00000669908.1

  2. NR_148926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006012

  3. NR_148927.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006012

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    69594804..69597624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    70817587..70820407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases