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LOC100507464 uncharacterized LOC100507464 [ Homo sapiens (human) ]

Gene ID: 100507464, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100507464
Gene description
uncharacterized LOC100507464
See related
Ensembl:ENSG00000253380
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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Location:
8q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (49496763..49512180, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (49874570..49889999, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (50409322..50424739, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19185 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:50291207-50292406 Neighboring gene RN7SK pseudogene 294 Neighboring gene ret finger protein like 4A pseudogene 7 Neighboring gene NANOG hESC enhancer GRCh37_chr8:50516568-50517170 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:50568577-50569776 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:50629145-50629825 Neighboring gene phosphoserine aminotransferase 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50755104-50755652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50754554-50755103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50822872-50823816 Neighboring gene syntrophin gamma 1 Neighboring gene NANOG hESC enhancer GRCh37_chr8:50969100-50969624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:51066297-51066804 Neighboring gene uncharacterized LOC124900619 Neighboring gene uncharacterized LOC105375829

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090155, AW103845
    Related
    ENST00000518854.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    49496763..49512180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    49874570..49889999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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