U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01968 long intergenic non-protein coding RNA 1968 [ Homo sapiens (human) ]

Gene ID: 100507391, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01968provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1968provided by HGNC
Primary source
HGNC:HGNC:52794
See related
Ensembl:ENSG00000237222 AllianceGenome:HGNC:52794
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194708421..194782168)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (197404970..197478739)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (194429150..194502897)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene TMEM44 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21031 Neighboring gene MPRA-validated peak4980 silencer Neighboring gene uncharacterized LOC124909474 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:194395226-194396425 Neighboring gene large 60S subunit nuclear export GTPase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21033 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194407453-194407958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194407959-194408462 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21034 Neighboring gene uncharacterized LOC105374292 Neighboring gene family with sequence similarity 43 member A Neighboring gene Sharpr-MPRA regulatory region 10974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21035 Neighboring gene Sharpr-MPRA regulatory region 1010 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194470908-194471615 Neighboring gene MPRA-validated peak4981 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:194471765-194471953 Neighboring gene Sharpr-MPRA regulatory region 2136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21036 Neighboring gene family with sequence similarity 151 member A pseudogene Neighboring gene long intergenic non-protein coding RNA 1972 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194503362-194504561 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194560957-194562156 Neighboring gene uncharacterized LOC107986173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194601129-194601629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:194664161-194664661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194665942-194666442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194666443-194666943 Neighboring gene uncharacterized LOC105374294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194707036-194707536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194708829-194709329

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

Clone Names

  • AC090505.6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037891.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090505, AC106706
    Related
    ENST00000423318.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    194708421..194782168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    197404970..197478739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases