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LOC100506858 uncharacterized LOC100506858 [ Homo sapiens (human) ]

Gene ID: 100506858, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100506858
Gene description
uncharacterized LOC100506858
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5p15.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (2303720..2312201, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (2219474..2227943, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (2303834..2312315, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene keratin-associated protein 5-5-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1930660-1931240 Neighboring gene uncharacterized LOC105374618 Neighboring gene meiotic recombination hotspot 5A Neighboring gene NANOG hESC enhancer GRCh37_chr5:1944459-1944980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1945776-1946394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1948847-1949348 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:1950332-1951531 Neighboring gene Sharpr-MPRA regulatory region 501 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1961828-1962566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1964219-1964719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1973793-1974292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2067819-2068402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2068403-2068984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2075638-2076138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2077789-2078290 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83860 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83872 Neighboring gene VISTA enhancer hs633 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2136525-2137724 Neighboring gene NANOG hESC enhancer GRCh37_chr5:2144015-2144548 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145193-2145694 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2145695-2146194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2146889-2147388 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83887 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:2157739-2158239 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2175812-2176312 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2191782-2192282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2192283-2192783 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83970 Neighboring gene VISTA enhancer hs1327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2212387-2213238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2260271-2261061 Neighboring gene uncharacterized LOC124901166 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269269-2269796 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:2269797-2270323 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2299803-2300482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2353718-2354218 Neighboring gene NANOG hESC enhancer GRCh37_chr5:2359276-2359777 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2393157-2394356 Neighboring gene uncharacterized LOC124901167 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84195 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84199 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2591788-2592348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2592349-2592909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2635417-2636236 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:2640855-2641373 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:2655710-2656909 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:2658151-2659350 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:2663143-2663330 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:2696278-2696794 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:2697069-2698268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:2709931-2710432 Neighboring gene long stress-induced non-coding transcript 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104616.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA442505, AW291183

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    2303720..2312201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    2219474..2227943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases