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ITPKB-IT1 ITPKB intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100506443, updated on 22-Oct-2024

Summary

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Official Symbol
ITPKB-IT1provided by HGNC
Official Full Name
ITPKB intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41349
See related
Ensembl:ENSG00000228382 AllianceGenome:HGNC:41349
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ITPKB-IT1 in Genome Data Viewer
Location:
1q42.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (226656080..226675068, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (225844262..225863252, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (226843781..226862769, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373116 Neighboring gene Sharpr-MPRA regulatory region 7345 Neighboring gene Sharpr-MPRA regulatory region 13952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226755704-226756204 Neighboring gene stum, mechanosensory transduction mediator homolog Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226784052-226784579 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226785107-226785634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226789667-226790203 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226790204-226790739 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226791949-226792628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226792629-226793308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226822865-226823648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226830147-226830814 Neighboring gene Sharpr-MPRA regulatory region 1086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226832149-226832814 Neighboring gene MPRA-validated peak735 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226834481-226835372 Neighboring gene Sharpr-MPRA regulatory region 9391 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2659 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226841474-226842065 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226846645-226847475 Neighboring gene inositol-trisphosphate 3-kinase B Neighboring gene uncharacterized LOC124904529 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226850479-226851004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226872731-226873232 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226876299-226876798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1889 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:226896320-226896495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2668 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226905393-226905892 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:226911101-226911856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226925617-226926116 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:226942001-226942500 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2671 Neighboring gene ribosomal protein S27 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2672 Neighboring gene uncharacterized LOC124904530 Neighboring gene Sharpr-MPRA regulatory region 12356

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. Fox CS, et al. PLoS Genet, 2012. PMID 22589738, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ITPKB intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103784.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365444
    Related
    ENST00000412918.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    226656080..226675068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    225844262..225863252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials