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RHOQ-AS1 RHOQ antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506142, updated on 10-Oct-2023

Summary

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Official Symbol
RHOQ-AS1provided by HGNC
Official Full Name
RHOQ antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40816
See related
Ensembl:ENSG00000250116 AllianceGenome:HGNC:40816
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.2), appendix (RPKM 0.7) and 13 other tissues See more
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Genomic context

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See RHOQ-AS1 in Genome Data Viewer
Location:
2p21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (46568256..46580238, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (46573243..46585226, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (46795395..46807377, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906002 Neighboring gene ATPase H+ transporting V1 subunit E2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11448 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11449 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11450 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15710 Neighboring gene ras homolog family member Q Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15713 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15714 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:46813126-46813309 Neighboring gene uncharacterized LOC124906003 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class F Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15715 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11452 Neighboring gene CXXC repeat containing interactor of PDZ3 domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104182.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018682, BC039392, BC048424
    Related
    ENST00000506009.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    46568256..46580238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    46573243..46585226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases