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LINC02382 long intergenic non-protein coding RNA 2382 [ Homo sapiens (human) ]

Gene ID: 100506107, updated on 10-Oct-2023

Summary

Official Symbol
LINC02382provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2382provided by HGNC
Primary source
HGNC:HGNC:53305
See related
Ensembl:ENSG00000250968 AllianceGenome:HGNC:53305
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
4q33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (170742469..170743735, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (174099954..174101220, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (171663620..171664886, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2512 Neighboring gene MPRA-validated peak5147 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22149 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:171431628-171432827 Neighboring gene heat shock protein 90 alpha family class A member 6, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:171664428-171664928 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:171709212-171709832 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:171709833-171710452 Neighboring gene RNA, U6atac small nuclear 13, pseudogene Neighboring gene uncharacterized LOC124900869

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134683.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF086144, BU078148
    Related
    ENST00000515840.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    170742469..170743735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    174099954..174101220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)