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GLCCI1-DT GLCCI1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100505921, updated on 10-Oct-2023

Summary

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Official Symbol
GLCCI1-DTprovided by HGNC
Official Full Name
GLCCI1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40852
See related
AllianceGenome:HGNC:40852
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 7.4) and thyroid (RPKM 0.4) See more
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Genomic context

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See GLCCI1-DT in Genome Data Viewer
Location:
7p21.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (7949839..7968752, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (8068359..8087268, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (7989470..8008383, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901586 Neighboring gene RNA, U6 small nuclear 534, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25650 Neighboring gene cyclin B2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17967 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25653 Neighboring gene peptidylprolyl isomerase like 4 pseudogene Neighboring gene glucocorticoid induced 1 Neighboring gene MPRA-validated peak6363 silencer Neighboring gene uncharacterized LOC105375142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC006042.7, AC009473.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110018.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006042, AI223166, BQ441241

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    7949839..7968752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    8068359..8087268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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