SH3BP5-AS1 SH3BP5 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SH3BP5-AS1provided by HGNC
Official Full Name: SH3BP5 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:44501
See related: Ensembl:ENSG00000224660 AllianceGenome:HGNC:44501
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Ubiquitous expression in adrenal (RPKM 45.6), fat (RPKM 24.4) and 24 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 3p25.1

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	3	NC_000003.12 (15254184..15264498)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	3	NC_060927.1 (15256590..15266904)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	3	NC_000003.11 (15295691..15306005)

Chromosome 3 - NC_000003.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

D3S2776E (e-PCR)
- UniSTS:150817

SHGC-76742 (e-PCR)
- UniSTS:23116

SHGC-64041 (e-PCR)
- UniSTS:28045

RH102919 (e-PCR)
- UniSTS:97253

RH66709 (e-PCR)
- UniSTS:88295

D3S1323E (e-PCR)
- UniSTS:147439

RH66166 (e-PCR)
- UniSTS:92149

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.