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RRS1-DT RRS1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100505676, updated on 22-Oct-2024

Summary

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Official Symbol
RRS1-DTprovided by HGNC
Official Full Name
RRS1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:50465
See related
Ensembl:ENSG00000246145 AllianceGenome:HGNC:50465
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RRS1-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See RRS1-DT in Genome Data Viewer
Location:
8q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (66419587..66428977, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (66845161..66854547, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67331822..67341212, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268029 Neighboring gene uncharacterized LOC124901954 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:67098699-67099309 Neighboring gene uncharacterized LOC102724687 Neighboring gene long intergenic non-protein coding RNA 967 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67140301-67141126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67141127-67141950 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:67164075-67164914 Neighboring gene MPRA-validated peak7057 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27477 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27478 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27480 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19253 Neighboring gene NANOG hESC enhancer GRCh37_chr8:67358104-67358753 Neighboring gene alcohol dehydrogenase iron containing 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:67370279-67370807 Neighboring gene ribosome biogenesis regulator 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RRS1 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040434.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI743648, AK125958
    Related
    ENST00000499642.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    66419587..66428977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    66845161..66854547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001242759.1: Suppressed sequence

    Description
    NM_001242759.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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