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LHX2-AS1 LHX2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505588, updated on 10-Oct-2023

Summary

Official Symbol
LHX2-AS1provided by HGNC
Official Full Name
LHX2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56163
See related
Ensembl:ENSG00000236668
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
9q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (124006277..124009396, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (136204195..136207314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (126768556..126771675, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1A Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:126625148-126625690 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:126625691-126626232 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:126656962-126657562 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class F pseudogene 2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:126665592-126666092 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:126666093-126666593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:126691277-126691962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126755411-126755911 Neighboring gene uncharacterized LOC105376267 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126760357-126761111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126763235-126763735 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:126767105-126767862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126769682-126770393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126770394-126771104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20255 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:126774959-126775531 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:126775532-126776104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126792309-126793096 Neighboring gene uncharacterized LOC107987037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126803186-126803720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:126803721-126804253 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:126807814-126808609 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:126840763-126841962 Neighboring gene LIM homeobox 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135129.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006450, AK131516, BM681295, DA158383
    Related
    ENST00000453529.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    124006277..124009396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    136204195..136207314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)