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LINC01602 long intergenic non-protein coding RNA 1602 [ Homo sapiens (human) ]

Gene ID: 100505477, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01602provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1602provided by HGNC
Primary source
HGNC:HGNC:51634
See related
Ensembl:ENSG00000205293 AllianceGenome:HGNC:51634
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
T1560
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01602 in Genome Data Viewer
Location:
8q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (57978358..57984126)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (58399800..58405568)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (58890917..58896685)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3018 Neighboring gene HNF4 and FOXA motif-containing MPRA enhancers 14 and 42 Neighboring gene uncharacterized LOC105375856 Neighboring gene MPRA-validated peak7034 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58831444-58831956 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:58831957-58832467 Neighboring gene NANOG hESC enhancer GRCh37_chr8:58887201-58887738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:58907533-58908033 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:58926679-58927179 Neighboring gene family with sequence similarity 110 member B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58978669-58979170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:59010395-59011058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:59011059-59011722 Neighboring gene NANOG hESC enhancer GRCh37_chr8:59030663-59031236 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:59034986-59035605 Neighboring gene ribosomal protein L26 pseudogene 26 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:59058363-59058965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27406 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19216 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:59085063-59085589 Neighboring gene uncharacterized LOC107986945 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:59108481-59109680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. TTF-2 stimulates expression of 17 genes, including one novel thyroid-specific gene which might be involved in thyroid development. Hishinuma A, et al. Mol Cell Endocrinol, 2004 Jun 30. PMID 15223130
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Gene T1560 is upregulated by thyroid transcription factor-2 and shows a highly thyroid-specific expression pattern.
    Title: TTF-2 stimulates expression of 17 genes, including one novel thyroid-specific gene which might be involved in thyroid development.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB111913, AC104350, BC040611
    Related
    ENST00000522992.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    57978358..57984126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    58399800..58405568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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