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nfyc.S nuclear transcription factor Y subunit gamma S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100505444, updated on 4-Nov-2024

Summary

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Official Symbol
nfyc.S
Official Full Name
nuclear transcription factor Y subunit gamma S homeolog
Primary source
Xenbase:XB-GENE-17341684
Locus tag
XELAEV_18015234mg
See related
EnsemblRapid:ENSXLAG00005004434 AllianceGenome:Xenbase:XB-GENE-17341684
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hsm; cbfc; hap5; cbf-c; nf-yc; h1tf2a
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Orthologous to human NFYC (nuclear transcription factor Y subunit gamma). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nfyc.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (79369281..79415291)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (72070997..72117104)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene tubulointerstitial nephritis antigen-like 1 S homeolog Neighboring gene regulating synaptic membrane exocytosis 3 S homeolog Neighboring gene uncharacterized LOC108709588 Neighboring gene potassium channel, voltage gated KQT-like subfamily Q, member 4 S homeolog Neighboring gene small ArfGAP2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Xenopus NF-Y pre-sets chromatin to potentiate p300 and acetylation-responsive transcription from the Xenopus hsp70 promoter in vivo. Li Q, et al. EMBO J, 1998 Nov 2. PMID 9799238, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear transcription factor Y subunit gamma S homeolog
Names
nuclear Y/CCAAT-box binding factor C subunit NF-YC

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197280.1 → NP_001184209.1  nuclear transcription factor Y subunit gamma S homeolog

    See identical proteins and their annotated locations for NP_001184209.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077939
    UniProtKB/TrEMBL
    A0A974HVZ8, Q6DCR1
    Related
    ENSXLAP00005013249.1, ENSXLAT00005013429.1
    Conserved Domains (1) summary
    pfam00808
    Location:41 → 103
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79369281..79415291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041582946.1 → XP_041438880.1  nuclear transcription factor Y subunit gamma S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MCR5
    Conserved Domains (1) summary
    COG5208
    Location:15 → 121
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_018247984.2 → XP_018103473.1  nuclear transcription factor Y subunit gamma S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HVZ8, Q6DCR1

  3. XM_018247980.2 → XP_018103469.1  nuclear transcription factor Y subunit gamma S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HVZ8, Q6DCR1
    Related
    ENSXLAP00005013255.1, ENSXLAT00005013435.1

  4. XM_018247979.2 → XP_018103468.1  nuclear transcription factor Y subunit gamma S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HVZ8, Q6DCR1

  5. XM_018247981.2 → XP_018103470.1  nuclear transcription factor Y subunit gamma S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HVZ8, Q6DCR1
Nucleotide Protein Strain
Heading Accession and Version

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