U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Brd3os bromodomain containing 3, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 100504116, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Brd3osprovided by MGI
Official Full Name
bromodomain containing 3, opposite strandprovided by MGI
Primary source
MGI:MGI:106557
See related
Ensembl:ENSMUSG00000109946 AllianceGenome:MGI:106557
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm20071; A230069D13; D2Bwg1423e
Summary
Orthologous to human BRD3OS (BRD3 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in cortex adult (RPKM 11.3), CNS E18 (RPKM 11.1) and 19 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Brd3os in Genome Data Viewer
Location:
2 A3; 2 19.38 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (27332486..27334233)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (27442436..27444221)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene sarcosine dehydrogenase Neighboring gene vav 2 oncogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:27159262-27159371 Neighboring gene Vav2R10 erythroid cis-regulatory module Neighboring gene Vav2R3 erythroid cis-regulatory module Neighboring gene STARR-seq mESC enhancer starr_04000 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:27269900-27270101 Neighboring gene Vav2R7 erythroid cis-regulatory module Neighboring gene STARR-seq mESC enhancer starr_04002 Neighboring gene Vav2R5 erythroid cis-regulatory module Neighboring gene microRNA 7578 Neighboring gene bromodomain containing 3 Neighboring gene makorin, ring finger protein, 1 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, et al. Genome Res, 1997 Nov. PMID 9371744, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
putative uncharacterized protein BRD3OS

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360790.2 → NP_001347719.1  putative uncharacterized protein BRD3OS

    Status: VALIDATED

    Source sequence(s)
    AL772282
    Consensus CDS
    CCDS89457.1
    UniProtKB/TrEMBL
    A0A1B0GRB6
    Related
    ENSMUSP00000147455.2, ENSMUST00000209765.2

  2. NM_001360791.2 → NP_001347720.1  putative uncharacterized protein BRD3OS

    Status: VALIDATED

    Source sequence(s)
    AL772282
    Consensus CDS
    CCDS89457.1
    UniProtKB/TrEMBL
    A0A1B0GRB6

  3. NM_001360792.2 → NP_001347721.1  putative uncharacterized protein BRD3OS

    Status: VALIDATED

    Source sequence(s)
    AL772282
    Consensus CDS
    CCDS89457.1
    UniProtKB/TrEMBL
    A0A1B0GRB6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    27332486..27334233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials