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Gm5901 predicted gene 5901 [ Mus musculus (house mouse) ]

Gene ID: 100503879, updated on 17-Aug-2024

Summary

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Official Symbol
Gm5901provided by MGI
Official Full Name
predicted gene 5901provided by MGI
Primary source
MGI:MGI:3643909
See related
Ensembl:ENSMUSG00000078611 AllianceGenome:MGI:3643909
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG545989
Summary
Orthologous to human C11orf42 (chromosome 11 open reading frame 42). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 70.4), frontal lobe adult (RPKM 26.5) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Gm5901 in Genome Data Viewer
Location:
7 E3; 7 55.84 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (105024245..105027584)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (105375038..105378377)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 52 subfamily B member 2 Neighboring gene olfactory receptor family 52 subfamily W member 1 Neighboring gene FHF complex subunit HOOK interacting protein 1B Neighboring gene STARR-positive B cell enhancer ABC_E4960 Neighboring gene STARR-positive B cell enhancer ABC_E3739 Neighboring gene cyclic nucleotide gated channel alpha 4 Neighboring gene predicted gene 4972

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf42 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195727.2 → NP_001182656.1  uncharacterized protein C11orf42 homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform (1).
    Source sequence(s)
    AC125055
    Consensus CDS
    CCDS57573.1
    UniProtKB/TrEMBL
    D3YVJ1
    Related
    ENSMUSP00000102417.3, ENSMUST00000106805.4
    Conserved Domains (1) summary
    pfam15668
    Location:1 → 328
    DUF4663; Domain of unknown function (DUF4663)

  2. NM_001329995.1 → NP_001316924.1  uncharacterized protein C11orf42 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) initiates translation at a downstream start codon compared to variant 3. The encoded isoform (2) is shorter than isoform 3.
    Source sequence(s)
    AC125055, BB615116

  3. NM_001382419.1 → NP_001369348.1  uncharacterized protein C11orf42 homolog isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) encodes the longest isoform (3)
    Source sequence(s)
    AC125055
    Conserved Domains (1) summary
    pfam15668
    Location:1 → 329
    DUF4663; Domain of unknown function (DUF4663)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    105024245..105027584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials