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Lnp1 leukemia NUP98 fusion partner 1 [ Mus musculus (house mouse) ]

Gene ID: 100503609, updated on 2-Nov-2024

Summary

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Official Symbol
Lnp1provided by MGI
Official Full Name
leukemia NUP98 fusion partner 1provided by MGI
Primary source
MGI:MGI:5011982
See related
Ensembl:ENSMUSG00000109588 AllianceGenome:MGI:5011982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm19797
Summary
Orthologous to human LNP1 (leukemia NUP98 fusion partner 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in frontal lobe adult (RPKM 1.2), CNS E18 (RPKM 0.1) and 2 other tissues See more
Orthologs
human all
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Genomic context

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See Lnp1 in Genome Data Viewer
Location:
16 C1.1; 16 34.22 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (56734454..56748600, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (56914100..56928188, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 45a Neighboring gene STARR-seq mESC enhancer starr_41071 Neighboring gene programmed cell death 6 interacting protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_41072 Neighboring gene STARR-seq mESC enhancer starr_41073 Neighboring gene STARR-seq mESC enhancer starr_41074 Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene Neighboring gene transmembrane protein 45A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
leukemia NUP98 fusion partner 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347042.1 → NP_001333971.1  leukemia NUP98 fusion partner 1

    Status: VALIDATED

    Source sequence(s)
    CT009577
    Consensus CDS
    CCDS84244.1
    UniProtKB/TrEMBL
    A0A1B0GSK3
    Related
    ENSMUSP00000147973.2, ENSMUST00000210579.2
    Conserved Domains (1) summary
    pfam15419
    Location:13 → 175
    LNP1; Leukemia NUP98 fusion partner 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    56734454..56748600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248899.2 → XP_030104759.1  leukemia NUP98 fusion partner 1 isoform X1

    UniProtKB/TrEMBL
    A0A1B0GSK3
    Conserved Domains (1) summary
    pfam15419
    Location:13 → 175
    LNP1; Leukemia NUP98 fusion partner 1
Nucleotide Protein
Heading Accession and Version

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Chemical Information
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