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Trpc5os transient receptor potential cation channel, subfamily C, member 5, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 100503240, updated on 2-Nov-2024

Summary

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Official Symbol
Trpc5osprovided by MGI
Official Full Name
transient receptor potential cation channel, subfamily C, member 5, opposite strandprovided by MGI
Primary source
MGI:MGI:3641805
See related
Ensembl:ENSMUSG00000072934 AllianceGenome:MGI:3641805
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm15070
Summary
Orthologous to human TRPC5OS (TRPC5 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Trpc5os in Genome Data Viewer
Location:
X F2; X 65.58 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (143238872..143260059)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (144455876..144477063)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_48041 Neighboring gene STARR-seq mESC enhancer starr_48042 Neighboring gene predicted gene, 33235 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene asparagine-linked glycosylation 13 Neighboring gene STARR-seq mESC enhancer starr_48044 Neighboring gene transient receptor potential cation channel, subfamily C, member 5 Neighboring gene BRCA1 associated RING domain 1 pseudogene Neighboring gene MAGE family member B16, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
putative uncharacterized protein TRPC5OS homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195579.1 → NP_001182508.1  putative uncharacterized protein TRPC5OS homolog

    See identical proteins and their annotated locations for NP_001182508.1

    Status: VALIDATED

    Source sequence(s)
    AK147193
    Consensus CDS
    CCDS85811.1
    UniProtKB/Swiss-Prot
    Q3UHV4
    Related
    ENSMUSP00000148184.2, ENSMUST00000155206.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    143238872..143260059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528663.4 → XP_006528726.1  putative uncharacterized protein TRPC5OS homolog isoform X1

    See identical proteins and their annotated locations for XP_006528726.1

    UniProtKB/Swiss-Prot
    Q3UHV4

  2. XM_006528664.3 → XP_006528727.1  putative uncharacterized protein TRPC5OS homolog isoform X1

    See identical proteins and their annotated locations for XP_006528727.1

    UniProtKB/Swiss-Prot
    Q3UHV4

  3. XM_006528668.5 → XP_006528731.1  putative uncharacterized protein TRPC5OS homolog isoform X1

    See identical proteins and their annotated locations for XP_006528731.1

    UniProtKB/Swiss-Prot
    Q3UHV4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UHV4.1 GenPept UniProtKB/Swiss-Prot:Q3UHV4

Gene LinkOut

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