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2010010A06Rik RIKEN cDNA 2010010A06 gene [ Mus musculus (house mouse) ]

Gene ID: 100503117, updated on 17-Aug-2024

Summary

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Official Symbol
2010010A06Rikprovided by MGI
Official Full Name
RIKEN cDNA 2010010A06 geneprovided by MGI
Primary source
MGI:MGI:1913686
See related
Ensembl:ENSMUSG00000121833 AllianceGenome:MGI:1913686
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5033420E22Rik
Expression
Biased expression in duodenum adult (RPKM 3.2), large intestine adult (RPKM 2.8) and 4 other tissues See more
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Genomic context

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See 2010010A06Rik in Genome Data Viewer
Location:
18 E3; 18 51.06 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75421731..75430400, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75288660..75297329, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene dymeclin Neighboring gene STARR-seq mESC enhancer starr_45034 Neighboring gene high mobility group box 1 pseudogene Neighboring gene predicted gene, 46624 Neighboring gene STARR-seq mESC enhancer starr_45036 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75438314-75438515 Neighboring gene STARR-seq mESC enhancer starr_45046 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75464300-75464409 Neighboring gene STARR-positive B cell enhancer ABC_E7611 Neighboring gene STARR-seq mESC enhancer starr_45057 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75513492-75513601 Neighboring gene STARR-seq mESC enhancer starr_45059 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75537151-75537467 Neighboring gene STARR-seq mESC enhancer starr_45061 Neighboring gene predicted gene 20544 Neighboring gene SMAD family member 7 Neighboring gene predicted gene, 41776

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045393.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK019891
    Related
    ENSMUST00000186356.2

  2. NR_045394.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several exons and includes an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC121511, AK008334
    Related
    ENSMUST00000190465.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75421731..75430400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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