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Gm3336 predicted gene 3336 [ Mus musculus (house mouse) ]

Gene ID: 100502950, updated on 17-Aug-2024

Summary

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Official Symbol
Gm3336provided by MGI
Official Full Name
predicted gene 3336provided by MGI
Primary source
MGI:MGI:3781514
See related
Ensembl:ENSMUSG00000095026 AllianceGenome:MGI:3781514
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100041434; 2410018E23Rik
Expression
Biased expression in colon adult (RPKM 42.7), stomach adult (RPKM 40.2) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See Gm3336 in Genome Data Viewer
Location:
8 B3.3; 8 34.15 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71171144..71175284)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70718495..70722635)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:73222195-73222304 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:73222558-73222745 Neighboring gene STARR-positive B cell enhancer ABC_E6648 Neighboring gene jun D proto-oncogene Neighboring gene IQ motif containing N Neighboring gene predicted gene, 34255 Neighboring gene phosphodiesterase 4C, cAMP specific Neighboring gene STARR-positive B cell enhancer ABC_E1370 Neighboring gene RAB3A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized LOC729966 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195253.1 → NP_001182182.1  uncharacterized LOC729966 homolog precursor

    Status: VALIDATED

    Source sequence(s)
    AC162446
    Consensus CDS
    CCDS57624.1
    UniProtKB/TrEMBL
    J3QMQ6
    Related
    ENSMUSP00000136399.2, ENSMUST00000179347.3
    Conserved Domains (1) summary
    PLN03209
    Location:38 → 139
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    71171144..71175284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312493.3 → XP_017167982.1  uncharacterized LOC729966 homolog isoform X1

    Conserved Domains (1) summary
    PLN03209
    Location:48 → 128
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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