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Gm19299 predicted gene, 19299 [ Mus musculus (house mouse) ]

Gene ID: 100502636, updated on 17-Aug-2024

Summary

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Official Symbol
Gm19299provided by MGI
Official Full Name
predicted gene, 19299provided by MGI
Primary source
MGI:MGI:5011484
See related
Ensembl:ENSMUSG00000111556 AllianceGenome:MGI:5011484
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm19299 in Genome Data Viewer
Location:
9 C; 9 36.34 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (67040843..67071070)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (67133561..67163788)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm100 Neighboring gene STARR-positive B cell enhancer ABC_E6761 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:66892840-66892949 Neighboring gene tropomyosin 1, alpha Neighboring gene STARR-seq mESC enhancer starr_24488 Neighboring gene predicted gene 10646 Neighboring gene predicted gene, 22145 Neighboring gene STARR-seq mESC enhancer starr_24489 Neighboring gene predicted gene, 40529 Neighboring gene STARR-seq mESC enhancer starr_24490 Neighboring gene STARR-seq mESC enhancer starr_24492 Neighboring gene microRNA 190a Neighboring gene talin 2 Neighboring gene STARR-seq mESC enhancer starr_24494 Neighboring gene STARR-seq mESC enhancer starr_24495 Neighboring gene STARR-seq mESC enhancer starr_24496 Neighboring gene predicted gene, 30936

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045748.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK136121
    Related
    ENSMUST00000215724.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    67040843..67071070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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