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MIR548Y microRNA 548y [ Homo sapiens (human) ]

Gene ID: 100500919, updated on 10-Oct-2023

Summary

Official Symbol
MIR548Yprovided by HGNC
Official Full Name
microRNA 548yprovided by HGNC
Primary source
HGNC:HGNC:38980
See related
Ensembl:ENSG00000263945 miRBase:MI0016595; AllianceGenome:HGNC:38980
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

See MIR548Y in Genome Data Viewer
Location:
14q21.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (47760995..47761104, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (41959843..41959952, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (48230198..48230307, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 2 Neighboring gene MPRA-validated peak2152 silencer Neighboring gene ribosomal protein L13a pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5695 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:47769492-47770691 Neighboring gene NANOG hESC enhancer GRCh37_chr14:47858750-47859440 Neighboring gene ribosomal protein S15a pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr14:48005441-48006008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48035091-48035590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48034589-48035090 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:48088147-48089346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:48145545-48146044 Neighboring gene kinesin family member 20B pseudogene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:48263841-48264342 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:48264343-48264842 Neighboring gene long intergenic non-protein coding RNA 648 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:48435515-48436135 Neighboring gene ataxin 3 pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037503.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL162551
    Related
    ENST00000582739.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    47760995..47761104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    41959843..41959952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)