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LOC100499870 NAD(P)H dehydrogenase (quinone) FQR1-like [ Glycine max (soybean) ]

Gene ID: 100499870, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100499870
Gene description
NAD(P)H dehydrogenase (quinone) FQR1-like
Locus tag
GLYMA_12G216900v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100499870 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (39101113..39105695, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (37654430..37659012, complement)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121172647 Neighboring gene uncharacterized LOC106795347 Neighboring gene transcription factor bHLH123 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 Neighboring gene nuclear factor Y transcription factor family protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD(P)H dehydrogenase (quinone) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAD(P)H dehydrogenase (quinone) FQR1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001250256.2 → NP_001237185.1  NAD(P)H dehydrogenase (quinone) FQR1-like isoform 1

    See identical proteins and their annotated locations for NP_001237185.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
    Source sequence(s)
    ACUP04004412, EV280148
    UniProtKB/TrEMBL
    C6SVU1, C6SXL2
    Conserved Domains (1) summary
    cl00438
    Location:3 → 200
    FMN_red; NADPH-dependent FMN reductase

  2. NM_001363180.1 → NP_001350109.1  NAD(P)H dehydrogenase (quinone) FQR1-like isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    BE822245, BQ612916, BT089681
    UniProtKB/TrEMBL
    C6SWY7, I1LUT8
    Conserved Domains (1) summary
    cl00438
    Location:5 → 196
    FMN_red; NADPH-dependent FMN reductase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    39101113..39105695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014764311.3 → XP_014619797.1  NAD(P)H dehydrogenase (quinone) FQR1-like isoform X1

    UniProtKB/TrEMBL
    C6SWY7
    Conserved Domains (1) summary
    cl00438
    Location:35 → 226
    FMN_red; NADPH-dependent FMN reductase
Nucleotide Protein
Heading Accession and Version

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