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XB5871033 provisional ortholog of core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496837, updated on 4-Nov-2024

Summary

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Symbol
XB5871033provided by Xenbase
Full Name
provisional ortholog of core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5871034
See related
Ensembl:ENSXETG00000025171 AllianceGenome:Xenbase:XB-GENE-5871034
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity and nucleotide binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See XB5871033 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (141321837..141340049)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (138106115..138109802)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1 Neighboring gene osteosarcoma amplified 9, endoplasmic reticulum lectin Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    141321837..141340049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897178.1 → XP_031753038.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A6I8Q7F2
    Conserved Domains (1) summary
    cl21608
    Location:90 → 240
    Galactosyl_T; Galactosyltransferase

  2. XM_031897177.1 → XP_031753037.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A6I8Q7F2
    Related
    ENSXETP00000068442.2, ENSXETT00000092098.2
    Conserved Domains (1) summary
    cl21608
    Location:90 → 240
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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