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chst6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495636, updated on 4-Nov-2024

Summary

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Official Symbol
chst6provided by Xenbase
Official Full Name
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6provided by Xenbase
Primary source
Xenbase:XB-GENE-960885
See related
Ensembl:ENSXETG00000045362 AllianceGenome:Xenbase:XB-GENE-960885
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mcdc1; chst5.1
Summary
Predicted to enable sulfotransferase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in macular corneal dystrophy. Orthologous to several human genes including CHST5 (carbohydrate sulfotransferase 5) and CHST6 (carbohydrate sulfotransferase 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chst6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (64188621..64209651, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (66607149..66628682, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100495799 Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 Neighboring gene phospholipase C gamma 2 Neighboring gene transmembrane protein 231 Neighboring gene GABA(A) receptor-associated protein like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64188621..64209651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004913608.4 → XP_004913665.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_004913665.1

    UniProtKB/TrEMBL
    A0A803J252
    Related
    ENSXETP00000117271.1, ENSXETT00000108116.1
    Conserved Domains (1) summary
    pfam13469
    Location:44 → 290
    Sulfotransfer_3; Sulfotransferase family

  2. XM_031900794.1 → XP_031756654.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A803J252
    Related
    ENSXETP00000101887.1, ENSXETT00000115415.1
    Conserved Domains (1) summary
    pfam13469
    Location:44 → 290
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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