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wdr27 WD repeat domain 27 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495291, updated on 4-Nov-2024

Summary

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Official Symbol
wdr27provided by Xenbase
Official Full Name
WD repeat domain 27provided by Xenbase
Primary source
Xenbase:XB-GENE-980102
See related
Ensembl:ENSXETG00000036962 AllianceGenome:Xenbase:XB-GENE-980102
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See wdr27 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (50820491..50913996)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (40177185..40270342)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene PHD finger protein 10 Neighboring gene chromosome 5 C6orf120 homolog Neighboring gene phenylethanolamine N-methyltransferase gene 2 Neighboring gene thrombospondin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
WD repeat-containing protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    50820491..50913996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002931515.5 → XP_002931561.2  WD repeat-containing protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A803J6H0, A0A803KAF5
    Related
    ENSXETP00000117400.1, ENSXETT00000117735.1
    Conserved Domains (2) summary
    sd00039
    Location:515 → 551
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:514 → 822
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_018094192.1 → XP_017949681.1  WD repeat-containing protein 27 isoform X2

    UniProtKB/TrEMBL
    A0A6I8R155, A0A803J841
    Related
    ENSXETP00000104044.1, ENSXETT00000123642.1

  3. XM_031902359.1 → XP_031758219.1  WD repeat-containing protein 27 isoform X3

    UniProtKB/TrEMBL
    A0A803J6H0, A0A8J1JK16
    Conserved Domains (2) summary
    sd00039
    Location:27 → 64
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:19 → 231
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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