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trim13 tripartite motif containing 13 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492997, updated on 4-Nov-2024

Summary

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Official Symbol
trim13provided by Xenbase
Official Full Name
tripartite motif containing 13provided by Xenbase
Primary source
Xenbase:XB-GENE-961103
See related
AllianceGenome:Xenbase:XB-GENE-961103
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human TRIM13 (tripartite motif containing 13). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See trim13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (149422192..149427488)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (146558137..146563499)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene karyopherin alpha 3 (importin alpha 4) Neighboring gene SPRY domain containing 7 Neighboring gene potassium channel regulator Neighboring gene microRNA mir-16a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the Western clawed frog Xenopus tropicalis. Hellsten U, et al. Science, 2010 Apr 30. PMID 20431018, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tripartite motif containing 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    149422192..149427488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911967.4 → XP_004912024.2  tripartite motif containing 13

    UniProtKB/TrEMBL
    A0A803JCR7, A0A8J0R0X9
    Conserved Domains (2) summary
    cd16762
    Location:8 → 64
    RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
    cd19767
    Location:95 → 136
    Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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