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hepacam2 HEPACAM family member 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490765, updated on 17-Aug-2024

Summary

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Official Symbol
hepacam2provided by Xenbase
Official Full Name
HEPACAM family member 2provided by Xenbase
Primary source
Xenbase:XB-GENE-6043868
See related
Ensembl:ENSXETG00000013881
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See hepacam2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (32097237..32142019)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (23850845..23895363)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 133 member B Neighboring gene cyclin-dependent kinase 6 Neighboring gene sterile alpha motif domain containing 9-like Neighboring gene VPS50 EARP/GARPII complex subunit Neighboring gene acrosin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in centrosome cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in midbody IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in spindle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
HEPACAM family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    32097237..32142019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012965610.3 → XP_012821064.2  HEPACAM family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A803JIV3, F6WZ71
    Related
    ENSXETP00000030379.5, ENSXETT00000030379.5
    Conserved Domains (3) summary
    pfam13927
    Location:128 → 202
    Ig_3; Immunoglobulin domain
    cd00096
    Location:146 → 150
    Ig; Ig strand B [structural motif]
    cl11960
    Location:242 → 313
    Ig; Immunoglobulin domain

  2. XM_002934597.5 → XP_002934643.3  HEPACAM family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A803JIV3, A0A8J0QQ22
    Conserved Domains (4) summary
    smart00409
    Location:258 → 331
    IG; Immunoglobulin
    pfam13927
    Location:148 → 222
    Ig_3; Immunoglobulin domain
    cd00096
    Location:166 → 170
    Ig; Ig strand B [structural motif]
    cl11960
    Location:39 → 133
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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