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ankfn1 ankyrin repeat and fibronectin type III domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490095, updated on 4-Nov-2024

Summary

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Official Symbol
ankfn1provided by Xenbase
Official Full Name
ankyrin repeat and fibronectin type III domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-29076854
See related
Ensembl:ENSXETG00000031668 AllianceGenome:Xenbase:XB-GENE-29076854
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ankfn1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (25601797..25813840)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (17750000..17936916)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408058 Neighboring gene transmembrane protein 100 Neighboring gene U2 spliceosomal RNA Neighboring gene noggin Neighboring gene uncharacterized LOC105945278 Neighboring gene chromosome 10 C17orf67 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ankyrin repeat and fibronectin type-III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    25601797..25813840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894809.1 → XP_031750669.1  ankyrin repeat and fibronectin type-III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A6I8PY99, A0A803JP09
    Related
    ENSXETP00000109676.1, ENSXETT00000124370.1
    Conserved Domains (3) summary
    cd00063
    Location:198 → 284
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00045
    Location:100 → 125
    ANK; ANK repeat [structural motif]
    cl39094
    Location:69 → 122
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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