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cilp cartilage intermediate layer protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489475, updated on 8-Mar-2024

Summary

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Official Symbol
cilpprovided by Xenbase
Official Full Name
cartilage intermediate layer proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-922666
See related
Ensembl:ENSXETG00000006650
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See cilp in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (116350464..116368518, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (117745679..117770118)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene Novel protein containing Rieske [2Fe-2S] domain and Protein of unknown function (DUF455) domains Neighboring gene mitochondrial methionyl-tRNA formyltransferase Neighboring gene type 2/nmI gonadotropin-releasing hormone receptor Neighboring gene poly(ADP-ribose) polymerase family member 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cartilage intermediate layer protein 1
Names
cartilage intermediate layer protein, nucleotide pyrophosphohydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    116350464..116368518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899247.1 → XP_031755107.1  cartilage intermediate layer protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1JB66
    Conserved Domains (4) summary
    smart00209
    Location:147 → 197
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:58 → 141
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13927
    Location:303 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:311 → 316
    Ig; Ig strand A' [structural motif]

  2. XM_031899246.1 → XP_031755106.1  cartilage intermediate layer protein 1 isoform X1

    UniProtKB/TrEMBL
    F6U172
    Related
    ENSXETP00000014569.5, ENSXETT00000014569.5
    Conserved Domains (4) summary
    smart00209
    Location:154 → 204
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:58 → 141
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13927
    Location:310 → 378
    Ig_3; Immunoglobulin domain
    cd00096
    Location:318 → 323
    Ig; Ig strand A' [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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