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XB5828378 gastrula zinc finger protein XlCGF66.1-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100488817, updated on 4-Nov-2024

Summary

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Symbol
XB5828378provided by Xenbase
Full Name
gastrula zinc finger protein XlCGF66.1-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-5828379
See related
AllianceGenome:Xenbase:XB-GENE-5828379
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See XB5828378 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (3810492..3852302, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683779.1 (43846..48319, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene H2A clustered histone 14 Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene zinc finger protein 577

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6-like; oocyte zinc finger protein XlCOF7.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    3810492..3852302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031893017.1 → XP_031748877.1  oocyte zinc finger protein XlCOF7.1-like isoform X1

    UniProtKB/TrEMBL
    A0A8J1ITF6
    Conserved Domains (3) summary
    COG5048
    Location:271 → 595
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523 → 543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:98 → 127
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_031893018.1 → XP_031748878.1  oocyte zinc finger protein XlCOF6-like isoform X2

    UniProtKB/TrEMBL
    A0A8J1ITG3
    Conserved Domains (2) summary
    COG5048
    Location:174 → 587
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:330 → 350
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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