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LOC100487319 gastrula zinc finger protein XlCGF57.1-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100487319, updated on 4-Nov-2024

Summary

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Official Symbol
LOC100487319provided by Xenbase
Official Full Name
gastrula zinc finger protein XlCGF57.1-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29078711
See related
AllianceGenome:Xenbase:XB-GENE-29078711
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC100487319 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (4965634..4971370, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (752004..756465)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein 5-1-like Neighboring gene harbinger transposase derived 1-like Neighboring gene histone H2A type 1 Neighboring gene histone H2B 1.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    4965634..4971370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904233.1 → XP_031760093.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A8J1JQD3
    Conserved Domains (2) summary
    COG5048
    Location:178 → 574
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 398
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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