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gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486486, updated on 4-Nov-2024

Summary

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Official Symbol
gcnt3provided by Xenbase
Official Full Name
glucosaminyl (N-acetyl) transferase 3, mucin typeprovided by Xenbase
Primary source
Xenbase:XB-GENE-5887146
See related
Ensembl:ENSXETG00000017715 AllianceGenome:Xenbase:XB-GENE-5887146
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gntm; c24gnt; c2gnt2; c2gntm; c2/4gnt
Summary
Predicted to enable glycosyltransferase activity. Predicted to be located in Golgi membrane. Orthologous to human GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gcnt3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (96483436..96486811, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (86804404..86806818, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene general transcription factor IIA 2 Neighboring gene provisional ortholog of glucosaminyl (N-acetyl) transferase 3, mucin type Neighboring gene proprotein convertase subtilisin/kexin type 5 Neighboring gene OTU deubiquitinase 7A Neighboring gene uncharacterized LOC116409767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    96483436..96486811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004917920.4 → XP_004917977.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3

    UniProtKB/TrEMBL
    A0A7D9NKE4
    Related
    ENSXETP00000038428.4, ENSXETT00000038428.5
    Conserved Domains (1) summary
    cl27418
    Location:134 → 404
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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