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nectin1l2 nectin cell adhesion molecule 1 like 2 gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100485504, updated on 4-Nov-2024

Summary

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Official Symbol
nectin1l2provided by Xenbase
Official Full Name
nectin cell adhesion molecule 1 like 2 gene 1provided by Xenbase
Primary source
Xenbase:XB-GENE-22065638
See related
Ensembl:ENSXETG00000010827 AllianceGenome:Xenbase:XB-GENE-22065638
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
nectin1l2.1
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nectin1l2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (7482823..7499681)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (4010844..4027180, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 1 like 1 Neighboring gene apovitellenin 1 gene 1 Neighboring gene nectin cell adhesion molecule 1 like 2 gene 2 Neighboring gene nectin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
OX-2 membrane glycoprotein; nectin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    7482823..7499681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896460.1 → XP_031752320.1  OX-2 membrane glycoprotein isoform X2

    UniProtKB/TrEMBL
    A0A8J1J5M7
    Conserved Domains (2) summary
    cd00096
    Location:22 → 26
    Ig; Ig strand A [structural motif]
    cl11960
    Location:22 → 130
    Ig; Immunoglobulin domain

  2. XM_002940918.5 → XP_002940964.2  nectin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0QSL9
    Related
    ENSXETP00000101973.1, ENSXETT00000120720.1
    Conserved Domains (2) summary
    smart00410
    Location:28 → 130
    IG_like; Immunoglobulin like
    cl11960
    Location:134 → 228
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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