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pcdh17 protocadherin 17 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100485388, updated on 4-Nov-2024

Summary

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Official Symbol
pcdh17provided by Xenbase
Official Full Name
protocadherin 17provided by Xenbase
Primary source
Xenbase:XB-GENE-480220
See related
Ensembl:ENSXETG00000013565 AllianceGenome:Xenbase:XB-GENE-480220
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Orthologous to human PCDH17 (protocadherin 17). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See pcdh17 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (130927525..131022490, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (127648323..127742103, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene diaphanous related formin 3 Neighboring gene uncharacterized LOC116408703 Neighboring gene protocadherin 8, gene 2 Neighboring gene uncharacterized LOC116408876 Neighboring gene protocadherin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protocadherin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    130927525..131022490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897118.1 → XP_031752978.1  protocadherin-17 isoform X3

    UniProtKB/TrEMBL
    A0A8J1J534
    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:21 → 103
    Cadherin_2; Cadherin-like

  2. XM_002936924.3 → XP_002936970.2  protocadherin-17 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SCC0
    Related
    ENSXETP00000095917.1, ENSXETT00000071186.2
    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:21 → 102
    Cadherin_2; Cadherin-like

  3. XM_031897119.1 → XP_031752979.1  protocadherin-17 isoform X4

    UniProtKB/TrEMBL
    F6ZDL3
    Related
    ENSXETP00000029750.4, ENSXETT00000029750.5
    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:21 → 103
    Cadherin_2; Cadherin-like

  4. XM_012957791.3 → XP_012813245.1  protocadherin-17 isoform X2

    UniProtKB/TrEMBL
    A0A803JAH6
    Related
    ENSXETP00000104874.1, ENSXETT00000114287.1
    Conserved Domains (2) summary
    cd11304
    Location:238 → 338
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:21 → 103
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein Strain
Heading Accession and Version

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