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znf569l zinc finger protein 569 like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100485062, updated on 4-Nov-2024

Summary

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Official Symbol
znf569lprovided by Xenbase
Official Full Name
zinc finger protein 569 likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29077587
See related
Ensembl:ENSXETG00000022176 AllianceGenome:Xenbase:XB-GENE-29077587
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See znf569l in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (2754919..2765915)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683428.1 (491672..495734, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 484 Neighboring gene zinc finger protein 33B like Neighboring gene zinc finger protein 583 like Neighboring gene zinc finger protein 24 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    2754919..2765915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904448.1 → XP_031760308.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    UniProtKB/TrEMBL
    A0A8J1JQY7
    Conserved Domains (2) summary
    COG5048
    Location:212 → 597
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_031904449.1 → XP_031760309.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

    UniProtKB/TrEMBL
    A0A803J651
    Conserved Domains (2) summary
    COG5048
    Location:195 → 580
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_004915612.4 → XP_004915669.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

    See identical proteins and their annotated locations for XP_004915669.1

    UniProtKB/TrEMBL
    A0A803J651
    Related
    ENSXETP00000103323.1, ENSXETT00000118606.1
    Conserved Domains (2) summary
    COG5048
    Location:195 → 580
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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