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LAYN layilin [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482852, updated on 8-Mar-2024

Summary

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Gene symbol
LAYN
Gene description
layilin
Locus tag
PANDA_009989
See related
Ensembl:ENSAMEG00000004312
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See LAYN in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (8096736..8113055)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217752.1 (1037713..1053916, complement)

Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene BTG anti-proliferation factor 4 Neighboring gene HOATZ cilia and flagella associated protein Neighboring gene salt inducible kinase 2 Neighboring gene protein phosphatase 2 scaffold subunit Abeta Neighboring gene U6 spliceosomal RNA Neighboring gene ALG9 alpha-1,2-mannosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
layilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048225.1 Reference ASM200744v2 Primary Assembly

    Range
    8096736..8113055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011227332.3 → XP_011225634.1  layilin isoform X1

    UniProtKB/TrEMBL
    A0A7N5P3G5, G1LCC5
    Related
    ENSAMEP00000004550.2, ENSAMET00000004734.2
    Conserved Domains (1) summary
    cd03595
    Location:38 → 186
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  2. XM_019801663.2 → XP_019657222.1  layilin isoform X3

    UniProtKB/TrEMBL
    A0A7N5P3G5
    Related
    ENSAMEP00000030357.1, ENSAMET00000042424.1

  3. XM_011227333.3 → XP_011225635.1  layilin isoform X2

    UniProtKB/TrEMBL
    A0A7N5K4K1, A0A7N5P3G5
    Related
    ENSAMEP00000034596.1, ENSAMET00000038604.1
    Conserved Domains (1) summary
    cd03595
    Location:30 → 178
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  4. XM_034665731.1 → XP_034521622.1  layilin isoform X4

Nucleotide Protein
Heading Accession and Version

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