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HEPH hephaestin [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482209, updated on 8-Mar-2024

Summary

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Gene symbol
HEPH
Gene description
hephaestin
Locus tag
PANDA_018040
See related
Ensembl:ENSAMEG00000014319
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See HEPH in Genome Data Viewer
Location:
chromosome: X
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) X NC_048238.1 (48115107..48227534)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218718.1 (85393..173409)

Chromosome X - NC_048238.1Genomic Context describing neighboring genes Neighboring gene signal peptidase complex subunit 1-like Neighboring gene V-set and immunoglobulin domain containing 4 Neighboring gene ectodysplasin A2 receptor Neighboring gene acylpyruvase FAHD1, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: hephaestin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048238.1 Reference ASM200744v2 Primary Assembly

    Range
    48115107..48227534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034649026.1 → XP_034504917.1  LOW QUALITY PROTEIN: hephaestin

    UniProtKB/TrEMBL
    G1M706
    Related
    ENSAMEP00000015126.2, ENSAMET00000015747.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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